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  5. Solyc08g076310.3.1

Solyc08g076310.3.1 (Solyc08g076310)


Aliases : Solyc08g076310

Description : calcium-permeable channel (OSCA)


Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g076310.3.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00143150 evm_27.TU.AmTr_v1... Solute transport.channels.OSCA calcium-permeable channel 0.04 OrthoFinder output from all 47 species
AT3G21620 No alias ERD (early-responsive to dehydration stress) family protein 0.03 OrthoFinder output from all 47 species
AT4G15430 No alias ERD (early-responsive to dehydration stress) family protein 0.02 OrthoFinder output from all 47 species
Adi_g002449 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015467 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33129 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04408 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29604.t1 Aspi01Gene29604 calcium-permeable channel *(OSCA) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.10G046800.1 ERD4, Ceric.10G046800 calcium-permeable channel *(OSCA) & original... 0.03 OrthoFinder output from all 47 species
Ceric.24G034200.1 HYP1, ATHYP1,... calcium-permeable channel *(OSCA) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000498.27 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre08.g360500 No alias CSC1-like protein At1g62320 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_08556 ERD4 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
Gb_24188 No alias calcium-permeable channel (OSCA) 0.04 OrthoFinder output from all 47 species
LOC_Os05g51630.1 LOC_Os05g51630 calcium-permeable channel (OSCA) 0.05 OrthoFinder output from all 47 species
LOC_Os07g05570.1 ERD4, LOC_Os07g05570 calcium-permeable channel (OSCA) 0.04 OrthoFinder output from all 47 species
Len_g15514 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28172 No alias calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10186845g0010 No alias CSC1-like protein At3g21620 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_125601g0010 ERD4 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
MA_99251g0010 ERD4 calcium-permeable channel (OSCA) 0.01 OrthoFinder output from all 47 species
Msp_g06040 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14451 HYP1, ATHYP1 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17620 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20112 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03204 HYP1, ATHYP1 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13639 No alias calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34034 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004134 4-alpha-glucanotransferase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR027815 CSC1/OSCA1-like_cyt 199 361
IPR032880 Csc1/OSCA1-like_N 7 178
IPR003864 CSC1/OSCA1-like_7TM 372 644
No external refs found!