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  5. LOC_Os03g50500.1

LOC_Os03g50500.1


Description : Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana (sp|q8vze4|pp299_arath : 560.0)


Gene families : OG_01_0010481 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010481_tree ,
OG_02_0010472 (LandPlants) Phylogenetic Tree(s): OG_02_0010472_tree ,
OG_03_0009439 (SeedPlants) Phylogenetic Tree(s): OG_03_0009439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g50500.1
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00117710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01570... 0.01 Archaeplastida
Gb_39532 No alias Pentatricopeptide repeat-containing protein At4g01570... 0.03 Archaeplastida
Gb_39532 No alias Pentatricopeptide repeat-containing protein At4g01570... 0.03 LandPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 647 676
IPR002885 Pentatricopeptide_repeat 228 253
IPR002885 Pentatricopeptide_repeat 611 635
IPR002885 Pentatricopeptide_repeat 405 437
IPR002885 Pentatricopeptide_repeat 332 380
IPR002885 Pentatricopeptide_repeat 679 723
IPR002885 Pentatricopeptide_repeat 260 309
No external refs found!