LOC_Os03g50500.1


Description : Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana (sp|q8vze4|pp299_arath : 560.0)


Gene families : OG_01_0010481 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010481_tree ,
OG_02_0010472 (LandPlants) Phylogenetic Tree(s): OG_02_0010472_tree ,
OG_03_0009439 (SeedPlants) Phylogenetic Tree(s): OG_03_0009439_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g50500.1
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00117710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01570... 0.01 Archaeplastida
Gb_39532 No alias Pentatricopeptide repeat-containing protein At4g01570... 0.03 Archaeplastida
Gb_39532 No alias Pentatricopeptide repeat-containing protein At4g01570... 0.03 LandPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 647 676
IPR002885 Pentatricopeptide_repeat 228 253
IPR002885 Pentatricopeptide_repeat 611 635
IPR002885 Pentatricopeptide_repeat 405 437
IPR002885 Pentatricopeptide_repeat 332 380
IPR002885 Pentatricopeptide_repeat 679 723
IPR002885 Pentatricopeptide_repeat 260 309
No external refs found!