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  5. Solyc08g074600.4.1

Solyc08g074600.4.1 (MED34, ATRECQ2,...)


Aliases : MED34, ATRECQ2, RECQL2, Solyc08g074600

Description : component MED34 of MEDIATOR transcription co-activator complex


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g074600.4.1

Target Alias Description ECC score Gene Family Method Actions
AT3G05740 RECQI1 RECQ helicase l1 0.02 OrthoFinder output from all 47 species
Als_g01082 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.05 OrthoFinder output from all 47 species
Als_g15902 RECQI1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0171.g055698 RecQl3, ATRECQ3 not classified & original description: CDS=1-1707 0.04 OrthoFinder output from all 47 species
Ceric.04G073400.1 MED34, ATRECQ2,... component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ceric.17G060200.1 ATRECQ4A,... helicase component *(RecQ4A) of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
Ceric.30G003800.1 RecQl3, ATRECQ3,... not classified & original description: pacid=50608389... 0.05 OrthoFinder output from all 47 species
Ceric.34G005600.1 RECQI1, Ceric.34G005600 not classified & original description: pacid=50623064... 0.04 OrthoFinder output from all 47 species
Dac_g16350 RecQl3, ATRECQ3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06356 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Dcu_g20432 RecQl3, ATRECQ3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036944001 MED34, ATRECQ2, RECQL2 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Len_g10275 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Len_g15171 RecQl3, ATRECQ3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g16510.1 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp7g16800.1 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g14824 RecQl3, ATRECQ3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014941 RECQI1 not classified & original description: CDS=257-2410 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021122 MED34, ATRECQ2, RECQL2 not classified & original description: CDS=82-2226 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 92 260
IPR002121 HRDC_dom 606 667
IPR001650 Helicase_C 311 407
IPR032284 RecQ_Zn-bd 420 476
No external refs found!