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  5. Solyc08g067200.2.1

Solyc08g067200.2.1 (ATDCL3, DCL3, Solyc08g067200)


Aliases : ATDCL3, DCL3, Solyc08g067200

Description : Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica (sp|q5n870|dcl3a_orysj : 303.0)


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc08g067200.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00051870 DCL4, ATDCL4,... RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.02 OrthoFinder output from all 47 species
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.04 OrthoFinder output from all 47 species
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.04 OrthoFinder output from all 47 species
Adi_g017408 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Aev_g19022 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Aev_g37944 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Aop_g06264 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Ceric.01G108700.1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.04 OrthoFinder output from all 47 species
Dac_g43749 DCL1, CAF,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019052001 ATDCL2, DCL2 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 OrthoFinder output from all 47 species
Lfl_g03508 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Lfl_g06763 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Solyc07g005030.4.1 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.04 OrthoFinder output from all 47 species
Zm00001e018890_P004 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 38 199
No external refs found!