LOC_Os03g50120.1


Description : RNA editing factor (OZ-type)


Gene families : OG_01_0001770 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001770_tree ,
OG_02_0001246 (LandPlants) Phylogenetic Tree(s): OG_02_0001246_tree ,
OG_03_0001272 (SeedPlants) Phylogenetic Tree(s): OG_03_0001272_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g50120.1
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.11 Archaeplastida
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.12 Archaeplastida
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_13912 No alias RNA editing factor (OZ-type) 0.04 Archaeplastida
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.04 Archaeplastida
MA_10436123g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_854125g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.14 Archaeplastida
Pp3c9_25770V3.1 No alias No annotation 0.02 Archaeplastida
Solyc01g099230.3.1 No alias RNA editing factor (OZ-type) 0.04 Archaeplastida
Zm00001e009343_P002 No alias No annotation 0.09 Archaeplastida
Zm00001e012200_P002 No alias RNA editing factor (OZ-type) 0.12 Archaeplastida
AMTR_s00088p00130080 evm_27.TU.AmTr_v1... Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.02 LandPlants
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.09 LandPlants
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.11 LandPlants
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.01 LandPlants
Gb_13912 No alias RNA editing factor (OZ-type) 0.04 LandPlants
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.04 LandPlants
MA_10436123g0020 No alias no hits & (original description: none) 0.03 LandPlants
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.14 LandPlants
Pp3c9_25770V3.1 No alias No annotation 0.02 LandPlants
Solyc01g099230.3.1 No alias RNA editing factor (OZ-type) 0.02 LandPlants
Zm00001e009343_P002 No alias No annotation 0.07 LandPlants
Zm00001e012200_P002 No alias RNA editing factor (OZ-type) 0.12 LandPlants
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.09 SeedPlants
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.11 SeedPlants
Gb_13912 No alias RNA editing factor (OZ-type) 0.04 SeedPlants
MA_10434973g0010 No alias RNA editing factor (OZ-type) 0.01 SeedPlants
MA_10436123g0020 No alias no hits & (original description: none) 0.03 SeedPlants
Solyc01g099230.3.1 No alias RNA editing factor (OZ-type) 0.03 SeedPlants
Zm00001e009343_P002 No alias No annotation 0.07 SeedPlants
Zm00001e012200_P002 No alias RNA editing factor (OZ-type) 0.12 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 364 386
IPR001876 Znf_RanBP2 329 357
IPR001876 Znf_RanBP2 290 318
No external refs found!