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  5. Solyc08g066760.4.1

Solyc08g066760.4.1 (Solyc08g066760)


Aliases : Solyc08g066760

Description : no hits & (original description: none)


Gene families : OG0003154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003154_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g066760.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00146120 evm_27.TU.AmTr_v1... Ankyrin repeat-containing protein ITN1 OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
AT1G10340 No alias Ankyrin repeat family protein 0.03 OrthoFinder output from all 47 species
AT2G24600 No alias Ankyrin repeat family protein 0.04 OrthoFinder output from all 47 species
AT3G09550 No alias Ankyrin repeat family protein 0.03 OrthoFinder output from all 47 species
AT5G54710 No alias Ankyrin repeat family protein 0.06 OrthoFinder output from all 47 species
Aev_g02439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025591001 No alias Ankyrin repeat-containing protein At5g02620... 0.03 OrthoFinder output from all 47 species
GSVIVT01035638001 No alias Ankyrin repeat-containing protein ITN1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01038244001 No alias Ankyrin repeat-containing protein At5g02620... 0.04 OrthoFinder output from all 47 species
Gb_06243 ITN1 Ankyrin repeat-containing protein ITN1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_13076 ITN1 Ankyrin repeat-containing protein ITN1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Gb_13078 ITN1 Ankyrin repeat-containing protein ITN1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os01g61990.2 ITN1, LOC_Os01g61990 Ankyrin repeat-containing protein NPR4 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_10427678g0010 ITN1 Ankyrin repeat-containing protein ITN1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_122773g0010 No alias Ankyrin repeat-containing protein ITN1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc08g014570.3.1 Solyc08g014570 Ankyrin repeat-containing protein At5g02620... 0.05 OrthoFinder output from all 47 species
Solyc08g066770.3.1 Solyc08g066770 Ankyrin repeat-containing protein ITN1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR020683 DUF3447 7 93
IPR020683 DUF3447 155 213
No external refs found!