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  5. Solyc08g062600.3.1

Solyc08g062600.3.1 (Solyc08g062600)


Aliases : Solyc08g062600

Description : Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana (sp|q6dbg8|arad1_arath : 260.0)


Gene families : OG0000774 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000774_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g062600.3.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00189850 ARAD1,... Cell wall.pectin.rhamnogalacturonan... 0.03 OrthoFinder output from all 47 species
AT3G03650 EDA5 Exostosin family protein 0.02 OrthoFinder output from all 47 species
AT3G45400 No alias exostosin family protein 0.01 OrthoFinder output from all 47 species
Adi_g054781 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117662 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g10392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04373 ARAD1 1,5-alpha-arabinosyltransferase *(ARAD) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene28945.t1 ARAD1, Aspi01Gene28945 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g40088 ARAD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g00598 ARAD1 1,5-alpha-arabinosyltransferase *(ARAD) & original... 0.01 OrthoFinder output from all 47 species
Ehy_g07485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21572 ARAD1 1,5-alpha-arabinosyltransferase *(ARAD) & original... 0.02 OrthoFinder output from all 47 species
Mp3g05600.1 No alias Probable arabinosyltransferase ARAD2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp5g02380.1 No alias Probable arabinosyltransferase ARAD1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Pir_g16682 ARAD1 1,5-alpha-arabinosyltransferase *(ARAD) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g13185 EDA5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g012977 No alias not classified & original description: CDS=661-2019 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0156.g023633 No alias not classified & original description: CDS=269-1720 0.04 OrthoFinder output from all 47 species
Sam_g09622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19185 EDA5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08251 ARAD1 1,5-alpha-arabinosyltransferase *(ARAD) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e004110_P002 Zm00001e004110 Probable arabinosyltransferase ARAD1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0120009 intermembrane lipid transfer IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
InterPro domains Description Start Stop
IPR040911 Exostosin_GT47 93 401
No external refs found!