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  5. Solyc08g062530.4.1

Solyc08g062530.4.1 (HDG10, Solyc08g062530)


Aliases : HDG10, Solyc08g062530

Description : Homeobox-leucine zipper protein ROC8 OS=Oryza sativa subsp. japonica (sp|q69t58|roc8_orysj : 86.7)


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g062530.4.1

Target Alias Description ECC score Gene Family Method Actions
AT1G34650 HDG10 homeodomain GLABROUS 10 0.01 OrthoFinder output from all 47 species
AT1G79840 GL2 HD-ZIP IV family of homeobox-leucine zipper protein with... 0.01 OrthoFinder output from all 47 species
AT2G32370 HDG3 homeodomain GLABROUS 3 0.02 OrthoFinder output from all 47 species
AT5G17320 HDG9 homeodomain GLABROUS 9 0.02 OrthoFinder output from all 47 species
Aspi01Gene17219.t1 PDF2, Aspi01Gene17219 HD-ZIP IV-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene27628.t1 ATML1, Aspi01Gene27628 HD-ZIP IV-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0006.g009667 PDF2 HD-ZIP IV-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0301.g063735 ATML1 HD-ZIP IV-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0591.g078757 ATML1 HD-ZIP IV-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Tin_g45820 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e040312_P001 PDF2, Zm00001e040312 transcription factor (HD-ZIP IV) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 26 77
No external refs found!