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  5. Solyc08g061140.3.1

Solyc08g061140.3.1 (OCP3, Solyc08g061140)


Aliases : OCP3, Solyc08g061140

Description : transcription factor (PINTOX)


Gene families : OG0006794 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006794_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g061140.3.1
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AT5G11270 OCP3 overexpressor of cationic peroxidase 3 0.03 OrthoFinder output from all 47 species
Adi_g060407 OCP3 PINTOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cre03.g200431 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Dcu_g22382 OCP3 PINTOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Gb_32631 OCP3 transcription factor (PINTOX) 0.06 OrthoFinder output from all 47 species
LOC_Os06g39906.1 OCP3, LOC_Os06g39906 transcription factor (PINTOX) 0.03 OrthoFinder output from all 47 species
Mp1g01010.1 OCP3 transcription factor (PINTOX) 0.06 OrthoFinder output from all 47 species
Zm00001e037326_P001 OCP3, Zm00001e037326 transcription factor (PINTOX) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 270 317
No external refs found!