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  5. Solyc08g061000.4.1

Solyc08g061000.4.1 (Solyc08g061000)


Aliases : Solyc08g061000

Description : RNA helicase (Sub2). helicase component UAP56 of TREX/THO mRNP trafficking complex


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g061000.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
AT5G11170 No alias DEAD/DEAH box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g069281 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32429 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28601.t1 Aspi01Gene28601 helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0065.g035967 No alias helicase UAP56 & original description: CDS=1-1335 0.02 OrthoFinder output from all 47 species
Cba_g12256 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g77168 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001376.20 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001376.21 No alias DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dcu_g43300 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Len_g56014 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49064 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003852 2-isopropylmalate synthase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006551 leucine metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0009098 leucine biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 129 294
IPR001650 Helicase_C 334 441
No external refs found!