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  5. Solyc08g016080.3.1

Solyc08g016080.3.1 (HCF173, Solyc08g016080)


Aliases : HCF173, Solyc08g016080

Description : HCF173 protein involved in PS-II assembly


Gene families : OG0006399 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006399_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g016080.3.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00232880 HCF173,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AT1G16720 HCF173 high chlorophyll fluorescence phenotype 173 0.11 OrthoFinder output from all 47 species
Adi_g026392 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Aev_g02401 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Ala_g08503 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Aob_g05244 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Cba_g03951 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Ceric.24G028300.1 HCF173, Ceric.24G028300 protein involved in PS-II assembly *(HCF173) & original... 0.13 OrthoFinder output from all 47 species
Cre13.g578650 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Dac_g00930 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g01607 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Dde_g21297 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g25310 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.06 OrthoFinder output from all 47 species
GSVIVT01029443001 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.15 OrthoFinder output from all 47 species
Gb_02290 HCF173 HCF173 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
LOC_Os02g04510.1 HCF173, LOC_Os02g04510 HCF173 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
LOC_Os06g49120.1 HCF173, LOC_Os06g49120 HCF173 protein involved in PS-II assembly 0.08 OrthoFinder output from all 47 species
Lfl_g12273 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
MA_21385g0010 HCF173 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g04800.1 HCF173 HCF173 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
Msp_g10500 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.07 OrthoFinder output from all 47 species
Nbi_g01268 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.06 OrthoFinder output from all 47 species
Ore_g17922 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.02 OrthoFinder output from all 47 species
Pir_g20180 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
Pnu_g27564 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g16606 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Smo183274 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
Zm00001e013206_P002 HCF173, Zm00001e013206 HCF173 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004096 catalase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013857 NADH-UbQ_OxRdtase-assoc_prot30 306 407
IPR016040 NAD(P)-bd_dom 164 257
IPR016040 NAD(P)-bd_dom 464 545
No external refs found!