1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g014080.4.1

Solyc08g014080.4.1 (Solyc08g014080)


Aliases : Solyc08g014080

Description : RING-v-class E3 ligase


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g014080.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00203490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Adi_g055014 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074839 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61209 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20737 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g77375 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G058300.1 Ceric.11G058300 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g09799 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06352 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008001001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01028110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_38414 No alias RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g28730.1 LOC_Os05g28730 RING-v-class E3 ligase 0.05 OrthoFinder output from all 47 species
Len_g05288 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g15643 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Len_g21743 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
MA_10427291g0010 No alias RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Ppi_g40789 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g010979 No alias E3 ubiquitin ligase & original description: CDS=450-1109 0.02 OrthoFinder output from all 47 species
Zm00001e026209_P003 Zm00001e026209 RING-v-class E3 ligase 0.08 OrthoFinder output from all 47 species
Zm00001e028572_P001 Zm00001e028572 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e031477_P002 Zm00001e031477 RING-v-class E3 ligase 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR022143 DUF3675 135 253
IPR011016 Znf_RING-CH 84 129
No external refs found!