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  5. Solyc08g013700.1.1

Solyc08g013700.1.1 (NGA3, Solyc08g013700)


Aliases : NGA3, Solyc08g013700

Description : transcription factor (RAV/NGATHA)


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g013700.1.1
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00199500 EDF4, RAV1,... No description available 0.04 OrthoFinder output from all 47 species
Als_g17658 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Cba_g10810 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01019699001 NGA1 RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
MA_116574g0010 EDF3 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
MA_18923g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
MA_20372g0020 EDF4, RAV1 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
MA_865117g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.06 OrthoFinder output from all 47 species
MA_94318g0010 TEM1, EDF1 transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Nbi_g11598 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e016956_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
Zm00001e023240_P001 NGA3, Zm00001e023240 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Zm00001e024165_P001 Zm00001e024165 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Zm00001e032325_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Zm00001e038099_P001 NGA3, Zm00001e038099 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
Zm00001e040214_P001 NGA3, Zm00001e040214 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 55 160
No external refs found!