Aliases : Solyc08g008590
Description : component RPL40 of LSU proteome component
Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00017p00094950 | UBQ6,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.07 | OrthoFinder output from all 47 species | |
AT2G36170 | No alias | Ubiquitin supergroup;Ribosomal protein L40e | 0.12 | OrthoFinder output from all 47 species | |
AT2G47110 | UBQ6 | ubiquitin 6 | 0.11 | OrthoFinder output from all 47 species | |
AT3G52590 | UBQ1, EMB2167,... | ubiquitin extension protein 1 | 0.1 | OrthoFinder output from all 47 species | |
AT3G62250 | UBQ5 | ubiquitin 5 | 0.07 | OrthoFinder output from all 47 species | |
Adi_g023730 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g18687 | UBQ14 | UBQ ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ala_g22856 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
Ala_g31252 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Als_g18351 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g16439 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g30723 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g23546 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Cba_g37486 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Cba_g45522 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g45568 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g74420 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.08G035500.1 | Ceric.08G035500 | component *(eL40) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
Ceric.21G057000.1 | UBQ6, Ceric.21G057000 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Ceric.21G057400.1 | UBQ6, Ceric.21G057400 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.22G050200.1 | UBQ6, Ceric.22G050200 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00022075.50 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.06 | OrthoFinder output from all 47 species | |
Cre01.g007051 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.02 | OrthoFinder output from all 47 species | |
Cre06.g273600 | UBQ6 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.12 | OrthoFinder output from all 47 species | |
Dac_g08496 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g19304 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g26143 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g38726 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
Ehy_g25908 | UBQ5 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01022543001 | No alias | Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01028198001 | No alias | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01033876001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01038617001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.09 | OrthoFinder output from all 47 species | |
Gb_15027 | UBQ6 | component RPS27a of SSU proteome | 0.08 | OrthoFinder output from all 47 species | |
Gb_40288 | UBQ6 | component RPS27a of SSU proteome | 0.09 | OrthoFinder output from all 47 species | |
Gb_41257 | No alias | component RPL40 of LSU proteome component | 0.09 | OrthoFinder output from all 47 species | |
LOC_Os01g22490.1 | UBQ6, LOC_Os01g22490 | component RPS27a of SSU proteome | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os03g13170.1 | LOC_Os03g13170 | component RPL40 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os05g06770.1 | UBQ6, LOC_Os05g06770 | component RPS27a of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os09g39500.1 | LOC_Os09g39500 | component RPL40 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Len_g02099 | RUB1, ATRUB1, NEDD8 | RUB ubiquitin-fold protein & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g04446 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g16121 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g23365 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g28234 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
MA_10435699g0020 | UBQ6 | component RPS27a of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
MA_13101g0020 | No alias | component RPL40 of LSU proteome component | 0.07 | OrthoFinder output from all 47 species | |
MA_529552g0010 | UBQ6 | component RPS27a of SSU proteome | 0.07 | OrthoFinder output from all 47 species | |
MA_9129425g0010 | No alias | component RPL40 of LSU proteome component | 0.06 | OrthoFinder output from all 47 species | |
Mp8g00780.1 | No alias | component RPL40 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Mp8g11720.1 | RUB1, ATRUB1, NEDD8 | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g27896 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Msp_g35305 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g38968 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g16243 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
Pir_g35714 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g32597 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pp3c10_25270V3.1 | Pp3c10_25270 | ubiquitin extension protein 1 | 0.07 | OrthoFinder output from all 47 species | |
Pp3c12_5640V3.1 | UBQ6, Pp3c12_5640 | ubiquitin 6 | 0.04 | OrthoFinder output from all 47 species | |
Pp3c12_5760V3.1 | UBQ6, Pp3c12_5760 | ubiquitin 6 | 0.05 | OrthoFinder output from all 47 species | |
Pp3c20_23170V3.1 | Pp3c20_23170 | ubiquitin extension protein 1 | 0.06 | OrthoFinder output from all 47 species | |
Pp3c24_430V3.1 | Pp3c24_430 | ubiquitin extension protein 1 | 0.04 | OrthoFinder output from all 47 species | |
Pp3c4_19000V3.1 | UBQ6, Pp3c4_19000 | ubiquitin 6 | 0.06 | OrthoFinder output from all 47 species | |
Pp3c8_14230V3.1 | UBQ6, Pp3c8_14230 | ubiquitin 6 | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g04808 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Ppi_g40236 | UBQ11 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0055.g014510 | UBQ6 | not classified & original description: CDS=1-258 | 0.03 | OrthoFinder output from all 47 species | |
Sam_g07360 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
Sam_g20114 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Smo111605 | UBQ6 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.04 | OrthoFinder output from all 47 species | |
Smo271198 | UBQ4 | Protein degradation.peptide tagging.Ubiquitin... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g068045.1.1 | UBQ6, Solyc01g068045 | component RPS27a of SSU proteome | 0.05 | OrthoFinder output from all 47 species | |
Spa_g02055 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g12171 | RUB1, ATRUB1, NEDD8 | RUB ubiquitin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Spa_g29602 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g29603 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g29979 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g43571 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g56402 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g28918 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e000962_P001 | Zm00001e000962 | component RPL40 of LSU proteome component | 0.1 | OrthoFinder output from all 47 species | |
Zm00001e009474_P001 | Zm00001e009474 | component RPL40 of LSU proteome component | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e026237_P001 | UBQ6, Zm00001e026237 | component RPS27a of SSU proteome | 0.12 | OrthoFinder output from all 47 species | |
Zm00001e028916_P001 | UBQ6, Zm00001e028916 | component RPS27a of SSU proteome | 0.11 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
MF | GO:0005515 | protein binding | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006414 | translational elongation | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
No external refs found! |