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  5. Solyc08g008160.4.1

Solyc08g008160.4.1 (Solyc08g008160)


Aliases : Solyc08g008160

Description : pre-60S ribosomal subunit assembly factor (NSA1)


Gene families : OG0005136 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005136_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g008160.4.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT1G29320 No alias Transducin/WD40 repeat-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aspi01Gene07103.t1 Aspi01Gene07103 pre-60S ribosomal subunit assembly factor *(NSA1) &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.40 No alias No description available 0.05 OrthoFinder output from all 47 species
Cre17.g718650 No alias No description available 0.07 OrthoFinder output from all 47 species
Dac_g10541 No alias pre-60S ribosomal subunit assembly factor *(NSA1) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01013111001 No alias No description available 0.08 OrthoFinder output from all 47 species
MA_60620g0010 No alias pre-60S ribosomal subunit assembly factor (NSA1) 0.06 OrthoFinder output from all 47 species
Pp3c13_24500V3.1 Pp3c13_24500 Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
Sam_g10518 No alias pre-60S ribosomal subunit assembly factor *(NSA1) &... 0.02 OrthoFinder output from all 47 species
Zm00001e010447_P001 Zm00001e010447 pre-60S ribosomal subunit assembly factor (NSA1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!