1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g007990.3.1

Solyc08g007990.3.1 (Solyc08g007990)


Aliases : Solyc08g007990

Description : NOB1 pre-rRNA processing endonuclease involved in ITS1 rRNA removal. endonuclease (NOB1)


Gene families : OG0006353 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006353_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g007990.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00064100 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
AT5G41190 No alias CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)... 0.04 OrthoFinder output from all 47 species
Ala_g09976 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Als_g00927 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020964.11 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre01.g031750 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Dac_g28114 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01019776001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Gb_33378 No alias NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.03 OrthoFinder output from all 47 species
LOC_Os02g02360.1 LOC_Os02g02360 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.06 OrthoFinder output from all 47 species
MA_101933g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ppi_g02269 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Zm00001e013450_P001 Zm00001e013450 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.03 OrthoFinder output from all 47 species
Zm00001e025376_P003 Zm00001e025376 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR033411 Ribonuclease_PIN 71 157
IPR014881 NOB1_Zn-bd 499 569
No external refs found!