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Aliases : Solyc08g007940
Description : transcription factor (LIM)
Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc08g007940.4.1 | |
| Cluster | HCCA: Cluster_94 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00009p00259550 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.LIM... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00065p00168710 | WLIM1,... | RNA biosynthesis.transcriptional activation.LIM... | 0.04 | OrthoFinder output from all 47 species | |
| AT1G01780 | No alias | GATA type zinc finger transcription factor family protein | 0.04 | OrthoFinder output from all 47 species | |
| AT2G45800 | No alias | GATA type zinc finger transcription factor family protein | 0.04 | OrthoFinder output from all 47 species | |
| Als_g51386 | No alias | LIM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene16342.t1 | Aspi01Gene16342 | LIM-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.35G013400.1 | Ceric.35G013400 | LIM-type transcription factor & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g28875 | No alias | LIM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g03324 | No alias | LIM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01019807001 | No alias | RNA biosynthesis.transcriptional activation.LIM... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g42820.1 | LOC_Os02g42820 | transcription factor (LIM) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g45010.1 | LOC_Os04g45010 | transcription factor (LIM) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os10g35930.1 | LOC_Os10g35930 | transcription factor (LIM) | 0.03 | OrthoFinder output from all 47 species | |
| MA_10428887g0010 | No alias | transcription factor (LIM) | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g19717 | No alias | LIM-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g01697 | No alias | LIM-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g16596 | No alias | LIM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14488 | No alias | LIM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo229974 | No alias | RNA biosynthesis.transcriptional activation.LIM... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g114000.3.1 | WLIM1, Solyc03g114000 | transcription factor (LIM) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g049870.3.1 | Solyc05g049870 | transcription factor (LIM) | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g04312 | No alias | LIM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e015234_P001 | Zm00001e015234 | transcription factor (LIM) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e023098_P001 | Zm00001e023098 | transcription factor (LIM) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e029431_P002 | WLIM1, Zm00001e029431 | transcription factor (LIM) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e041310_P001 | Zm00001e041310 | transcription factor (LIM) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0005092 | GDP-dissociation inhibitor activity | IEP | HCCA |
| MF | GO:0005094 | Rho GDP-dissociation inhibitor activity | IEP | HCCA |
| MF | GO:0005507 | copper ion binding | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| MF | GO:0005543 | phospholipid binding | IEP | HCCA |
| MF | GO:0005544 | calcium-dependent phospholipid binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0008272 | sulfate transport | IEP | HCCA |
| MF | GO:0008289 | lipid binding | IEP | HCCA |
| MF | GO:0015103 | inorganic anion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015116 | sulfate transmembrane transporter activity | IEP | HCCA |
| BP | GO:0015698 | inorganic anion transport | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| MF | GO:0030695 | GTPase regulator activity | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | HCCA |
| BP | GO:0072348 | sulfur compound transport | IEP | HCCA |
| MF | GO:0140677 | molecular function activator activity | IEP | HCCA |
| MF | GO:1901682 | sulfur compound transmembrane transporter activity | IEP | HCCA |
| No external refs found! |