Solyc08g007330.3.1 (ATMSH4, MSH4, Solyc08g007330)

Aliases : ATMSH4, MSH4, Solyc08g007330

Description : component MSH4 of MSH4-MSH5 Holliday junction stabilizing heterodimer

Gene families : OG0005572 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005572_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g007330.3.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g002290	ATMSH4, MSH4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g076738	ATMSH4, MSH4	component *(MSH4) of MSH4-MSH5 Holliday junction...	0.03	OrthoFinder output from all 47 species
Aspi01Gene24348.t1	ATMSH4, MSH4,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0144.g051547	ATMSH4, MSH4	component *(MSH4) of MSH4-MSH5 Holliday junction...	0.02	OrthoFinder output from all 47 species
Cba_g31504	ATMSH4, MSH4	component *(MSH4) of MSH4-MSH5 Holliday junction...	0.02	OrthoFinder output from all 47 species
Cre16.g692550	ATMSH4, MSH4	DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g43749	ATMSH4, MSH4	component *(MSH4) of MSH4-MSH5 Holliday junction...	0.03	OrthoFinder output from all 47 species
Dde_g08147	ATMSH4, MSH4	component *(MSH4) of MSH4-MSH5 Holliday junction...	0.02	OrthoFinder output from all 47 species
Dde_g25433	ATMSH4, MSH4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g13919	ATMSH4, MSH4	component *(MSH4) of MSH4-MSH5 Holliday junction...	0.02	OrthoFinder output from all 47 species
Len_g18238	ATMSH4, MSH4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g43640	ATMSH4, MSH4	component *(MSH4) of MSH4-MSH5 Holliday junction...	0.01	OrthoFinder output from all 47 species
Ppi_g53910	ATMSH4, MSH4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0112.g020793	ATMSH4, MSH4	component *(MSH4) of MSH4-MSH5 Holliday junction...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007861	DNA_mismatch_repair_MutS_clamp	363	454
IPR007696	DNA_mismatch_repair_MutS_core	171	492
IPR000432	DNA_mismatch_repair_MutS_C	550	735

External Links

No external refs found!

Solyc08g007330.3.1 (ATMSH4, MSH4, Solyc08g007330)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation