- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : Solyc08g007200
Description : contact site protein (VAP27) of ER-cytoskeleton-plasmamembrane interface
Gene families : OG0000655 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000655_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc08g007200.4.1 | |
| Cluster | HCCA: Cluster_114 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00057p00149330 | VAP27-2,... | Vesicle-associated protein 1-3 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g058643 | VAP27, VAP27-1,... | contact site protein (VAP27) of... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g03680 | PVA12 | contact site protein (VAP27) of... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g37439 | VAP27, VAP27-1,... | contact site protein (VAP27) of... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.39G059000.1 | VAP27, VAP27-1,... | contact site protein (VAP27) of... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g07429 | PVA12 | contact site protein (VAP27) of... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g06823 | VAP27, VAP27-1,... | contact site protein (VAP27) of... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g35384 | VAP27, VAP27-1,... | contact site protein (VAP27) of... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g45190.3 | PVA12, LOC_Os04g45190 | contact site protein (VAP27) of... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os10g40140.1 | LOC_Os10g40140 | contact site protein (VAP27) of... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g00566 | No alias | contact site protein (VAP27) of... | 0.05 | OrthoFinder output from all 47 species | |
| Mp3g04340.1 | PVA12 | contact site protein (VAP27) of... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g06542 | VAP27, VAP27-1,... | contact site protein (VAP27) of... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g20156 | PVA12 | contact site protein (VAP27) of... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e018705_P003 | VAP27-2, Zm00001e018705 | contact site protein (VAP27) of... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | HCCA |
| BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
| CC | GO:0016459 | myosin complex | IEP | HCCA |
| BP | GO:0022406 | membrane docking | IEP | HCCA |
| BP | GO:0048278 | vesicle docking | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| BP | GO:0051640 | organelle localization | IEP | HCCA |
| BP | GO:0140029 | exocytic process | IEP | HCCA |
| BP | GO:0140056 | organelle localization by membrane tethering | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000535 | MSP_dom | 10 | 103 |
| No external refs found! |