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  5. Solyc08g006940.4.1

Solyc08g006940.4.1 (Solyc08g006940)


Aliases : Solyc08g006940

Description : F-box protein SKIP19 OS=Arabidopsis thaliana (sp|q9m0u9|ski19_arath : 243.0)


Gene families : OG0000527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g006940.4.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Adi_g001112 SKIP1 substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.02 OrthoFinder output from all 47 species
Adi_g086567 No alias substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Aop_g27193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene46339.t1 FBW2, Aspi01Gene46339 substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ceric.02G023100.1 Ceric.02G023100 substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Dde_g26225 FBW2 regulatory protein *(FBW2) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
GSVIVT01022415001 FBW2 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Mp3g07000.1 No alias component F-box of SCF E3 ubiquitin ligase complex 0.02 OrthoFinder output from all 47 species
Nbi_g12157 FBW2 substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Pnu_g16969 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0193.g025375 FBW2 substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Tin_g45831 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e027535_P001 Zm00001e027535 Putative F-box/LRR-repeat protein 23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 14 58
No external refs found!