1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g005440.3.1

Solyc08g005440.3.1 (RPM1, RPS3, Solyc08g005440)


Aliases : RPM1, RPS3, Solyc08g005440

Description : RPM1 effector-triggered immunity CC-NLR-type effector receptor


Gene families : OG0000422 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000422_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g005440.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00245940 evm_27.TU.AmTr_v1... Disease resistance protein RPP8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00061p00086800 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AMTR_s00061p00165330 RPM1, RPS3,... Disease resistance protein RPP13 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00061p00205330 evm_27.TU.AmTr_v1... Probable disease resistance RPP8-like protein 2... 0.04 OrthoFinder output from all 47 species
AMTR_s00061p00207600 evm_27.TU.AmTr_v1... Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00090p00087950 RPP13,... Disease resistance protein RPP13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G58400 No alias Disease resistance protein (CC-NBS-LRR class) family 0.04 OrthoFinder output from all 47 species
AT1G58410 No alias Disease resistance protein (CC-NBS-LRR class) family 0.06 OrthoFinder output from all 47 species
AT1G58602 No alias LRR and NB-ARC domains-containing disease resistance protein 0.05 OrthoFinder output from all 47 species
AT1G59780 No alias NB-ARC domain-containing disease resistance protein 0.03 OrthoFinder output from all 47 species
AT3G46710 No alias NB-ARC domain-containing disease resistance protein 0.04 OrthoFinder output from all 47 species
ChrUn.fgenesh.mRNA.29 RPM1, RPS3 Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
GSVIVT01018564001 No alias Putative disease resistance RPP13-like protein 3... 0.03 OrthoFinder output from all 47 species
GSVIVT01024088001 No alias Putative late blight resistance protein homolog R1B-14... 0.03 OrthoFinder output from all 47 species
GSVIVT01024096001 No alias Putative disease resistance protein At1g59780... 0.03 OrthoFinder output from all 47 species
GSVIVT01024097001 No alias Probable disease resistance RPP8-like protein 2... 0.04 OrthoFinder output from all 47 species
GSVIVT01024102001 RPP13 Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01026910001 No alias Inactive disease susceptibility protein LOV1... 0.02 OrthoFinder output from all 47 species
GSVIVT01032824001 No alias Putative disease resistance protein At1g50180... 0.04 OrthoFinder output from all 47 species
GSVIVT01032828001 No alias Putative disease resistance protein At1g50180... 0.04 OrthoFinder output from all 47 species
LOC_Os01g23380.1 RPP13, LOC_Os01g23380 no description available(sp|p0do08|pikm2_orysj : 348.0) 0.03 OrthoFinder output from all 47 species
LOC_Os04g14220.2 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os08g28570.1 LOC_Os08g28570 no description available(sp|q2r8l1|rga5s_orysj : 394.0) 0.05 OrthoFinder output from all 47 species
LOC_Os08g32880.1 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os10g03570.1 LOC_Os10g03570 no description available(sp|q2r8l1|rga5s_orysj : 283.0) 0.03 OrthoFinder output from all 47 species
LOC_Os11g11990.1 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os11g12330.1 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os11g16470.2 LOC_Os11g16470 no description available(sp|q2r8l1|rga5s_orysj : 400.0) 0.04 OrthoFinder output from all 47 species
LOC_Os11g16510.1 LOC_Os11g16510 no description available(sp|p0do08|pikm2_orysj : 87.0) 0.03 OrthoFinder output from all 47 species
LOC_Os12g17090.1 LOC_Os12g17090 no description available(sp|f7j0n2|rga5r_orysj : 305.0) 0.03 OrthoFinder output from all 47 species
LOC_Os12g37760.1 LOC_Os12g37760 no description available(sp|p0do08|pikm2_orysj : 370.0) 0.03 OrthoFinder output from all 47 species
Solyc03g005670.3.1 Solyc03g005670 Disease resistance RPP8-like protein 3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc04g009240.2.1 RPP13, Solyc04g009240 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc04g009250.1.1 RPP13, Solyc04g009250 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc04g009290.1.1 RPP13, Solyc04g009290 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc04g009660.2.1 RPP13, Solyc04g009660 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc04g009690.2.1 RPP13, Solyc04g009690 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc04g026110.4.1 RPP13, Solyc04g026110 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc07g039410.3.1 Solyc07g039410 Putative disease resistance RPP13-like protein 3... 0.04 OrthoFinder output from all 47 species
Solyc07g039420.1.1 RPP13, Solyc07g039420 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e011204_P001 Zm00001e011204 no description available(sp|q2r8l1|rga5s_orysj : 371.0) 0.04 OrthoFinder output from all 47 species
Zm00001e017585_P001 Zm00001e017585 no description available(sp|p0do08|pikm2_orysj : 335.0) 0.03 OrthoFinder output from all 47 species
Zm00001e020947_P001 Zm00001e020947 Putative disease resistance protein RGA4 OS=Solanum... 0.03 OrthoFinder output from all 47 species
Zm00001e039751_P001 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002182 NB-ARC 175 425
IPR041118 Rx_N 7 89
No external refs found!