Solyc07g063960.3.1 (Solyc07g063960)

Aliases : Solyc07g063960

Description : component psRPL24 of large ribosomal subunit proteome

Gene families : OG0006569 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006569_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g063960.3.1
Cluster	HCCA: Cluster_133

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00098p00115780	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
AT5G54600	No alias	Translation protein SH3-like family protein	0.35	OrthoFinder output from all 47 species
Adi_g019582	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aev_g02979	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ala_g03130	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g04734	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Aop_g00183	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Azfi_s0006.g010426	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Cba_g02325	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.33G048800.1	Ceric.33G048800	component *(uL24c) of large plastid ribosomal-subunit...	0.22	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000455.16	No alias	No description available	0.03	OrthoFinder output from all 47 species
Cre16.g652550	No alias	Protein biosynthesis.organelle translation...	0.2	OrthoFinder output from all 47 species
Dac_g00331	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g00516	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dde_g05722	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ehy_g22263	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
GSVIVT01014572001	No alias	Protein biosynthesis.organelle translation...	0.16	OrthoFinder output from all 47 species
Gb_13209	No alias	50S ribosomal protein L24, chloroplastic OS=Spinacia...	0.11	OrthoFinder output from all 47 species
LOC_Os06g46930.1	LOC_Os06g46930	component psRPL24 of large ribosomal subunit proteome	0.25	OrthoFinder output from all 47 species
Len_g05147	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Lfl_g05272	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Mp3g07850.1	No alias	component psRPL24 of large ribosomal subunit proteome	0.3	OrthoFinder output from all 47 species
Msp_g18519	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Nbi_g00588	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.16	OrthoFinder output from all 47 species
Ore_g05626	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pir_g07148	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pnu_g08885	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pp3c15_17530V3.1	Pp3c15_17530	Translation protein SH3-like family protein	0.06	OrthoFinder output from all 47 species
Ppi_g33772	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016787	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Sam_g08486	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Sam_g08487	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Smo230291	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Spa_g00224	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Tin_g02402	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Zm00001e013043_P001	Zm00001e013043	component psRPL24 of large ribosomal subunit proteome	0.28	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005824	KOW	69	99
IPR003256	Ribosomal_L24	101	165

External Links

No external refs found!

Solyc07g063960.3.1 (Solyc07g063960)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation