Solyc07g063890.2.1 (Solyc07g063890)

Aliases : Solyc07g063890

Description : component RPL8 of LSU proteome component

Gene families : OG0001846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001846_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g063890.2.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00109050	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
AT2G18020	EMB2296	Ribosomal protein L2 family	0.25	OrthoFinder output from all 47 species
AT3G51190	No alias	Ribosomal protein L2 family	0.03	OrthoFinder output from all 47 species
AT4G36130	No alias	Ribosomal protein L2 family	0.19	OrthoFinder output from all 47 species
Adi_g047038	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Adi_g086062	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g113531	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aev_g02982	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g12035	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Als_g43864	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g63414	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g12168	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Ceric.30G024600.1	Ceric.30G024600	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020965.22	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.24	OrthoFinder output from all 47 species
Cre12.g535851	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.23	OrthoFinder output from all 47 species
Dac_g02131	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Dcu_g05184	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ehy_g07391	EMB2296	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01014552001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
LOC_Os12g38000.1	LOC_Os12g38000	component RPL8 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Lfl_g24495	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_10431163g0010	No alias	component RPL8 of LSU proteome component	0.11	OrthoFinder output from all 47 species
MA_219740g0010	No alias	component RPL8 of LSU proteome component	0.09	OrthoFinder output from all 47 species
MA_307029g0010	No alias	component RPL8 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Mp7g01860.1	EMB2296	component RPL8 of LSU proteome component	0.26	OrthoFinder output from all 47 species
Mp7g08730.1	EMB2296	component RPL8 of LSU proteome component	0.23	OrthoFinder output from all 47 species
Msp_g07633	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Nbi_g25715	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ore_g18846	EMB2296	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g18847	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ore_g44030	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g12813	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g31748	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c12_10200V3.1	EMB2296, Pp3c12_10200	Ribosomal protein L2 family	0.09	OrthoFinder output from all 47 species
Pp3c13_23630V3.1	EMB2296, Pp3c13_23630	Ribosomal protein L2 family	0.11	OrthoFinder output from all 47 species
Pp3c4_12690V3.1	EMB2296, Pp3c4_12690	Ribosomal protein L2 family	0.12	OrthoFinder output from all 47 species
Pp3c4_12720V3.1	EMB2296, Pp3c4_12720	Ribosomal protein L2 family	0.12	OrthoFinder output from all 47 species
Ppi_g33659	EMB2296	component *(uL2) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Ppi_g60464	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007902	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g13695	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Sam_g13696	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Smo170971	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Spa_g30832	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Spa_g39107	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Spa_g52209	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Tin_g00494	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Zm00001e002931_P001	EMB2296, Zm00001e002931	component RPL8 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Zm00001e018178_P001	EMB2296, Zm00001e018178	component RPL8 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Zm00001e033350_P001	EMB2296, Zm00001e033350	component RPL8 of LSU proteome component	0.18	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022666	Rbsml_prot_L2_RNA-bd_dom	13	90
IPR022669	Ribosomal_L2_C	98	230

External Links

No external refs found!

Solyc07g063890.2.1 (Solyc07g063890)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation