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  5. Solyc07g062770.2.1

Solyc07g062770.2.1 (Solyc07g062770)


Aliases : Solyc07g062770

Description : component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response heterodimer


Gene families : OG0001881 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001881_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g062770.2.1

Target Alias Description ECC score Gene Family Method Actions
AT3G15120 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Adi_g060029 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Adi_g117179 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Aev_g11042 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Ala_g18310 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.07 OrthoFinder output from all 47 species
Aob_g33764 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.05 OrthoFinder output from all 47 species
Aop_g10645 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010210 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.04 OrthoFinder output from all 47 species
Ceric.34G067200.1 Ceric.34G067200 component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g04982 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g38475 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Ehy_g11671 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g20668 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
GSVIVT01014274001 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.1 OrthoFinder output from all 47 species
Gb_05160 No alias ATPase family AAA domain-containing protein At1g05910... 0.04 OrthoFinder output from all 47 species
Gb_11471 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.05 OrthoFinder output from all 47 species
LOC_Os01g47800.1 LOC_Os01g47800 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g11424 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.06 OrthoFinder output from all 47 species
Lfl_g18945 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
MA_10425878g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10425878g0020 No alias ATPase family AAA domain-containing protein At1g05910... 0.05 OrthoFinder output from all 47 species
MA_10432357g0010 No alias ATPase family AAA domain-containing protein At1g05910... 0.08 OrthoFinder output from all 47 species
Mp2g00420.1 No alias ATPase family AAA domain-containing protein At1g05910... 0.07 OrthoFinder output from all 47 species
Nbi_g12891 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Ore_g22943 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.04 OrthoFinder output from all 47 species
Ore_g33221 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.07 OrthoFinder output from all 47 species
Ppi_g01388 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.06 OrthoFinder output from all 47 species
Ppi_g49222 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023552 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Sam_g48914 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Smo170139 No alias ATPase family AAA domain-containing protein At1g05910... 0.05 OrthoFinder output from all 47 species
Smo23739 No alias ATPase family AAA domain-containing protein At1g05910... 0.03 OrthoFinder output from all 47 species
Spa_g08442 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Tin_g06703 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination... 0.04 OrthoFinder output from all 47 species
Zm00001e034695_P003 Zm00001e034695 ATPase family AAA domain-containing protein At1g05910... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 823 855
IPR003959 ATPase_AAA_core 662 797
No external refs found!