Solyc07g054090.3.1 (Solyc07g054090)


Aliases : Solyc07g054090

Description : Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana (sp|q9sku6|pp166_arath : 335.0)


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g054090.3.1

Target Alias Description ECC score Gene Family Method Actions
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G21705 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g016255 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g030656 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057168 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10403 PPR596 RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g30824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07362 No alias RNA editing factor *(POCO) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g11741 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33654 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09907 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62468.t1 Aspi01Gene62468 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11231 No alias RNA editing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08858 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14866 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24432 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03895 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.04 OrthoFinder output from all 47 species
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Gb_14211 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Gb_20238 No alias RNA editing factor (POCO) 0.04 OrthoFinder output from all 47 species
LOC_Os01g17320.1 PPR596, LOC_Os01g17320 RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.05 OrthoFinder output from all 47 species
LOC_Os04g25410.1 LOC_Os04g25410 Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
LOC_Os07g12140.1 LOC_Os07g12140 RNA editing factor (POCO) 0.05 OrthoFinder output from all 47 species
LOC_Os07g40750.1 LOC_Os07g40750 Pentatricopeptide repeat-containing protein At4g21705,... 0.05 OrthoFinder output from all 47 species
LOC_Os10g35750.1 LOC_Os10g35750 Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g35760.2 LOC_Os10g35760 Pentatricopeptide repeat-containing protein At2g20710,... 0.04 OrthoFinder output from all 47 species
LOC_Os12g34340.1 LOC_Os12g34340 Pentatricopeptide repeat-containing protein At4g02820,... 0.02 OrthoFinder output from all 47 species
Len_g15360 PPR596 RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55669 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
MA_10431989g0010 No alias RNA editing factor (POCO) 0.02 OrthoFinder output from all 47 species
MA_10435629g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
MA_170161g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_29806g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
MA_9997953g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
Msp_g31351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29727 No alias RNA editing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g078350.3.1 Solyc02g078350 Pentatricopeptide repeat-containing protein At4g21705,... 0.04 OrthoFinder output from all 47 species
Tin_g14511 No alias RNA ediTing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.04 OrthoFinder output from all 47 species
Zm00001e039746_P002 Zm00001e039746 Pentatricopeptide repeat-containing protein At4g02820,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 181 228
IPR002885 Pentatricopeptide_repeat 324 351
IPR002885 Pentatricopeptide_repeat 361 387
IPR002885 Pentatricopeptide_repeat 255 275
IPR002885 Pentatricopeptide_repeat 394 417
No external refs found!