AMTR_s00067p00180030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00067.188

Description : DNA damage response.BRCA1–BARD1 DNA-damage response heterodimer.BRCA1|BARD1 component


Gene families : OG_01_0001412 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001412_tree ,
OG_02_0001772 (LandPlants) Phylogenetic Tree(s): OG_02_0001772_tree ,
OG_03_0001623 (SeedPlants) Phylogenetic Tree(s): OG_03_0001623_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00067p00180030
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
AT1G04020 BARD1, ROW1, ATBARD1 breast cancer associated RING 1 0.04 Archaeplastida
Cpa|evm.model.tig00020537.14 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 Archaeplastida
Cre07.g334650 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.02 Archaeplastida
Gb_00493 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.03 Archaeplastida
LOC_Os04g43300.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.03 Archaeplastida
MA_12220g0020 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 Archaeplastida
MA_66542g0010 No alias Protein BREAST CANCER SUSCEPTIBILITY 1 homolog... 0.03 Archaeplastida
Mp1g00070.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.05 Archaeplastida
Solyc06g008210.4.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 Archaeplastida
Zm00001e007590_P001 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 Archaeplastida
Zm00001e032102_P001 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 Archaeplastida
AT1G04020 BARD1, ROW1, ATBARD1 breast cancer associated RING 1 0.03 LandPlants
GSVIVT01021576001 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.06 LandPlants
Gb_00493 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.03 LandPlants
LOC_Os04g43300.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.02 LandPlants
LOC_Os05g43610.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.02 LandPlants
MA_12220g0020 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 LandPlants
Mp1g00070.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.05 LandPlants
Smo414577 No alias Protein biosynthesis.translation... 0.02 LandPlants
Solyc06g008210.4.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 LandPlants
Zm00001e007590_P001 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 LandPlants
Zm00001e032102_P001 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 LandPlants
AT1G04020 BARD1, ROW1, ATBARD1 breast cancer associated RING 1 0.03 SeedPlants
AT4G21070 BRCA1, ATBRCA1 breast cancer susceptibility1 0.02 SeedPlants
GSVIVT01021576001 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.05 SeedPlants
Gb_00493 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.03 SeedPlants
LOC_Os04g43300.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.02 SeedPlants
LOC_Os05g43610.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.02 SeedPlants
MA_12220g0020 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 SeedPlants
Solyc06g008210.4.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 SeedPlants
Zm00001e007590_P001 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.03 SeedPlants
Zm00001e032102_P001 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001357 BRCT_dom 568 636
No external refs found!