Solyc07g051970.3.1 (Solyc07g051970)

Aliases : Solyc07g051970

Description : chromatin remodeling factor (Rad5-like)

Gene families : OG0002085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002085_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g051970.3.1
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01012697001	No alias	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Len_g14364	No alias	chromatin remodeling factor *(Rad5-like) & original...	0.02	OrthoFinder output from all 47 species
Solyc07g041430.3.1	Solyc07g041430	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Solyc07g052020.2.1	Solyc07g052020	chromatin remodeling factor (Rad5-like)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	HCCA
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	449	529
IPR000330	SNF2_N	94	313

External Links

No external refs found!