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  5. Solyc07g049640.3.1

Solyc07g049640.3.1 (APL, WDY, Solyc07g049640)


Aliases : APL, WDY, Solyc07g049640

Description : no hits & (original description: none)


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g049640.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00190540 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Als_g04353 PHL1 GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
Als_g09241 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32729 No alias GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
Aob_g13779 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g22498 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene21949.t1 Aspi01Gene21949 transcription factor *(CLAUSA) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene48429.t1 Aspi01Gene48429 GARP subgroup PHL transcription factor & original... 0.17 OrthoFinder output from all 47 species
Azfi_s0006.g009521 No alias not classified & original description: CDS=1-1092 0.02 OrthoFinder output from all 47 species
Azfi_s0124.g048483 No alias transcription factor *(CLAUSA) & original description: CDS=1-1350 0.02 OrthoFinder output from all 47 species
Azfi_s0481.g073115 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g10228 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19840 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ehy_g06057 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01001376001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.07 OrthoFinder output from all 47 species
GSVIVT01007065001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
GSVIVT01015900001 APL, WDY RNA biosynthesis.transcriptional activation.MYB... 0.01 OrthoFinder output from all 47 species
GSVIVT01021225001 No alias Putative Myb family transcription factor At1g14600... 0.04 OrthoFinder output from all 47 species
GSVIVT01033515001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
LOC_Os02g04640.1 LOC_Os02g04640 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Len_g02256 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Msp_g04815 No alias GARP subgroup PHL transcription factor & original... 0.06 OrthoFinder output from all 47 species
Pnu_g11723 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pnu_g22623 KAN4, ATS KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24931 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017585 No alias not classified & original description: CDS=1499-2212 0.01 OrthoFinder output from all 47 species
Sam_g29265 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g24824 No alias GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
Zm00001e013626_P001 Zm00001e013626 G2-like GARP transcription factor 0.01 OrthoFinder output from all 47 species
Zm00001e030689_P002 Zm00001e030689 G2-like GARP transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e037131_P001 Zm00001e037131 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e037761_P001 Zm00001e037761 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 27 73
No external refs found!