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  5. Solyc07g049600.4.1

Solyc07g049600.4.1 (FIM5, FIM2, Solyc07g049600)


Aliases : FIM5, FIM2, Solyc07g049600

Description : fimbrin actin-crosslinking factor


Gene families : OG0001639 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001639_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g049600.4.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00193060 FIM5, FIM2,... Cytoskeleton.microfilament network.actin... 0.04 OrthoFinder output from all 47 species
Ala_g19621 FIM1, ATFIM1 fimbrin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11441 No alias fimbrin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13682 FIM5, FIM2 fimbrin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030417001 FIM5, FIM2 Cytoskeleton.microfilament network.actin... 0.04 OrthoFinder output from all 47 species
GSVIVT01037750001 FIM5, FIM2 Cytoskeleton.microfilament network.actin... 0.03 OrthoFinder output from all 47 species
LOC_Os02g37580.1 FIM5, FIM2,... fimbrin actin-crosslinking factor 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000526 No alias fimbrin actin-crosslinking factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g14587 No alias fimbrin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g083070.3.1 Solyc06g083070 fimbrin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species
Tin_g05161 FIM5, FIM2 fimbrin acTin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014968_P001 FIM5, FIM2,... fimbrin actin-crosslinking factor 0.07 OrthoFinder output from all 47 species
Zm00001e015665_P001 FIM5, FIM2,... fimbrin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001715 CH_dom 348 450
IPR001715 CH_dom 470 571
IPR001715 CH_dom 107 191
IPR001715 CH_dom 222 323
No external refs found!