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  5. Solyc07g049500.3.1

Solyc07g049500.3.1 (AGO6, Solyc07g049500)


Aliases : AGO6, Solyc07g049500

Description : siRNA-integrating factor (AGO)


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g049500.3.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 AGO4, OCP11,... Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
AMTR_s00044p00049370 AGO1,... Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
AMTR_s00058p00069070 AGO7, ZIP,... Chromatin organisation.DNA methylation.canonical... 0.05 OrthoFinder output from all 47 species
AMTR_s00122p00122810 PNH, AGO10, ZLL,... Chromatin organisation.DNA methylation.canonical... 0.09 OrthoFinder output from all 47 species
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 OrthoFinder output from all 47 species
AT2G27040 AGO4, OCP11 Argonaute family protein 0.06 OrthoFinder output from all 47 species
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.05 OrthoFinder output from all 47 species
Adi_g016083 PNH, AGO10, ZLL not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33064 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Als_g58865 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.04 OrthoFinder output from all 47 species
Cba_g16425 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Cba_g16426 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G056900.1 AGO1, Ceric.28G056900 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.04 OrthoFinder output from all 47 species
Ceric.30G040900.1 AGO4, OCP11,... siRNA-integrating factor *(AGO) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.34G039800.1 AGO1, Ceric.34G039800 regulatory protein *(AGO7) of transacting siRNA pathway... 0.04 OrthoFinder output from all 47 species
Dac_g05113 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07719 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Dcu_g16554 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Ehy_g18181 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
GSVIVT01030512001 AGO6 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
GSVIVT01037488001 AGO4, OCP11 Chromatin organisation.DNA methylation.canonical... 0.05 OrthoFinder output from all 47 species
Gb_34718 PNH, AGO10, ZLL Protein argonaute 10 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os01g16870.3 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.04 OrthoFinder output from all 47 species
LOC_Os02g07310.1 AGO1, LOC_Os02g07310 Protein argonaute 17 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os02g45070.1 AGO1, LOC_Os02g45070 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
LOC_Os02g58490.1 AGO1, LOC_Os02g58490 RIS-Complex miRNA recruiting factor (AGO1) 0.08 OrthoFinder output from all 47 species
LOC_Os04g06770.2 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.06 OrthoFinder output from all 47 species
LOC_Os04g47870.1 AGO1, LOC_Os04g47870 RIS-Complex miRNA recruiting factor (AGO1) 0.06 OrthoFinder output from all 47 species
LOC_Os06g39640.1 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.09 OrthoFinder output from all 47 species
Len_g18589 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
MA_10427420g0010 AGO1 Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_123150g0010 AGO7, ZIP siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.01 OrthoFinder output from all 47 species
Mp1g23190.1 AGO9 siRNA-integrating factor (AGO) 0.04 OrthoFinder output from all 47 species
Msp_g14613 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21068 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.04 OrthoFinder output from all 47 species
Nbi_g07722 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Ore_g05462 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Ore_g20845 PNH, AGO10, ZLL not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g66376 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Ppi_g18600 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Sam_g39081 No alias regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Spa_g09278 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007233_P001 AGO1, Zm00001e007233 RIS-Complex miRNA recruiting factor (AGO1) 0.01 OrthoFinder output from all 47 species
Zm00001e017367_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
Zm00001e029696_P001 AGO1, Zm00001e029696 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Zm00001e032609_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.04 OrthoFinder output from all 47 species
Zm00001e037347_P002 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Zm00001e041452_P004 AGO1, Zm00001e041452 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000077 DNA damage checkpoint signaling IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042770 signal transduction in response to DNA damage IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
InterPro domains Description Start Stop
IPR032472 ArgoL2 413 458
IPR014811 ArgoL1 218 265
IPR003165 Piwi 557 862
IPR003100 PAZ_dom 272 403
IPR032474 Argonaute_N 48 206
No external refs found!