1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g049130.1.1

Solyc07g049130.1.1 (Solyc07g049130)


Aliases : Solyc07g049130

Description : transcription factor (PLATZ)


Gene families : OG0000228 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000228_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g049130.1.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00211460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00241350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.04 OrthoFinder output from all 47 species
AMTR_s00033p00166000 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.04 OrthoFinder output from all 47 species
AT1G43000 No alias PLATZ transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G12646 No alias PLATZ transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT5G46710 No alias PLATZ transcription factor family protein 0.01 OrthoFinder output from all 47 species
Adi_g086526 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08279 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11638 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46803 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47610 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene21595.t1 Aspi01Gene21595 PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34065.t1 Aspi01Gene34065 PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0190.g056920 No alias PLATZ-type transcription factor & original description: CDS=1-966 0.03 OrthoFinder output from all 47 species
Ceric.13G040100.1 Ceric.13G040100 PLATZ-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.24G040000.1 Ceric.24G040000 PLATZ-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.39G029500.1 Ceric.39G029500 PLATZ-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
GSVIVT01004782001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
GSVIVT01012869001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.05 OrthoFinder output from all 47 species
GSVIVT01031446001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.03 OrthoFinder output from all 47 species
Gb_32018 No alias transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species
LOC_Os01g33370.1 LOC_Os01g33370 transcription factor (PLATZ) 0.06 OrthoFinder output from all 47 species
LOC_Os09g02790.1 LOC_Os09g02790 transcription factor (PLATZ) 0.07 OrthoFinder output from all 47 species
LOC_Os09g03080.1 LOC_Os09g03080 transcription factor (PLATZ) 0.07 OrthoFinder output from all 47 species
Lfl_g09730 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10310g0010 No alias transcription factor (PLATZ) 0.03 OrthoFinder output from all 47 species
Msp_g01480 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11386 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09290 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07254 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25448 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27584 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c15_23190V3.1 Pp3c15_23190 PLATZ transcription factor family protein 0.01 OrthoFinder output from all 47 species
Solyc02g032555.1.1 Solyc02g032555 transcription factor (PLATZ) 0.05 OrthoFinder output from all 47 species
Solyc02g033120.3.1 Solyc02g033120 transcription factor (PLATZ) 0.03 OrthoFinder output from all 47 species
Solyc02g036200.1.1 Solyc02g036200 transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species
Solyc02g036215.1.1 Solyc02g036215 transcription factor (PLATZ) 0.01 OrthoFinder output from all 47 species
Solyc08g076860.3.1 Solyc08g076860 transcription factor (PLATZ) 0.03 OrthoFinder output from all 47 species
Spa_g29503 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07994 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001922_P001 Zm00001e001922 transcription factor (PLATZ) 0.04 OrthoFinder output from all 47 species
Zm00001e007100_P003 Zm00001e007100 transcription factor (PLATZ) 0.03 OrthoFinder output from all 47 species
Zm00001e013748_P001 Zm00001e013748 transcription factor (PLATZ) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 16 56
IPR006734 PLATZ 59 133
No external refs found!