Solyc07g048030.4.1 (Solyc07g048030)


Aliases : Solyc07g048030

Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 203.0)


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g048030.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00174110 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Adi_g012805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g018550 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g054784 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g076948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05367 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g01865 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08655 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g13552 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g38419 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g46489 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g64152 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g03820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene06166.t1 Aspi01Gene06166 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72146.t1 Aspi01Gene72146 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0037.g026030 No alias not classified & original description: CDS=422-1717 0.01 OrthoFinder output from all 47 species
Cba_g15473 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02961 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g06314 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g46989 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g14502 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01027891001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_03098 No alias Uncharacterized protein At4g28440 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Len_g19867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g34283 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g10695 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g11046 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g21023 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g02226 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14102 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g55374 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014264 No alias not classified & original description: CDS=1-1203 0.01 OrthoFinder output from all 47 species
Sam_g10981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g42383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g42385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g45094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g47484 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g014820.4.1 Solyc04g014820 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc11g012470.2.1 Solyc11g012470 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Spa_g26277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11723 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010648_P001 Zm00001e010648 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e035389_P001 Zm00001e035389 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 108 165
IPR000504 RRM_dom 8 69
No external refs found!