Solyc07g047670.3.1 (Solyc07g047670)

Aliases : Solyc07g047670

Description : component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex

Gene families : OG0005537 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005537_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g047670.3.1
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00157670	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT5G14520	No alias	pescadillo-related	0.05	OrthoFinder output from all 47 species
Aob_g06678	No alias	component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.62	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Cre16.g683793	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01032412001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Gb_12407	No alias	component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.06	OrthoFinder output from all 47 species
LOC_Os03g49210.1	LOC_Os03g49210	component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.04	OrthoFinder output from all 47 species
Msp_g06596	No alias	component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.02	OrthoFinder output from all 47 species
Pp3c3_23250V3.1	Pp3c3_23250	pescadillo-related	0.04	OrthoFinder output from all 47 species
Sam_g14567	No alias	component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.02	OrthoFinder output from all 47 species
Smo166421	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001357	BRCT_dom	339	425
IPR010613	PES	10	274

External Links

No external refs found!