Solyc07g045480.3.1 (PHYC, Solyc07g045480)

Aliases : PHYC, Solyc07g045480

Description : phytochrome photoreceptor (PHY)

Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g045480.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00153850	FHY2, HY8, PHYA,...	External stimuli response.light.red/far red light.PHY...	0.03	OrthoFinder output from all 47 species
AT2G18790	HY3, OOP1, PHYB	phytochrome B	0.03	OrthoFinder output from all 47 species
AT4G18130	PHYE	phytochrome E	0.04	OrthoFinder output from all 47 species
AT5G35840	PHYC	phytochrome C	0.06	OrthoFinder output from all 47 species
Aev_g09187	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g24142	PHYE	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g16495	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g33149	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g02397	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g18615	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0313.g064222	FHY2, HY8, PHYA, FRE1	temperature sensor protein *(PHY-B) & original...	0.05	OrthoFinder output from all 47 species
Cba_g12773	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor *(PHY) & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g21134	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g14275	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g20972	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01021381001	PHYE	External stimuli response.temperature.temperature...	0.04	OrthoFinder output from all 47 species
LOC_Os03g19590.1	HY3, OOP1, PHYB,...	phytochrome photoreceptor (PHY). temperature sensor...	0.06	OrthoFinder output from all 47 species
MA_203210g0020	FHY2, HY8, PHYA, FRE1	Phytochrome OS=Pinus sylvestris (sp\|q41046\|phy_pinsy : 132.0)	0.03	OrthoFinder output from all 47 species
MA_6809g0010	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor (PHY)	0.03	OrthoFinder output from all 47 species
MA_6809g0020	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor (PHY)	0.04	OrthoFinder output from all 47 species
Msp_g14660	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g19479	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016463	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0118.g021223	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g16277	No alias	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g19599	No alias	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g24706	No alias	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g14459	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor *(PHY) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g06688	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0018298	obsolete protein-chromophore linkage	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013515	Phytochrome_cen-reg	410	585
IPR003018	GAF	218	397
IPR013767	PAS_fold	743	865
IPR013767	PAS_fold	613	727
IPR003594	HATPase_C	999	1106
IPR013654	PAS_2	70	185

External Links

No external refs found!

Solyc07g045480.3.1 (PHYC, Solyc07g045480)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation