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  5. Solyc07g045170.3.1

Solyc07g045170.3.1 (Solyc07g045170)


Aliases : Solyc07g045170

Description : no hits & (original description: none)


Gene families : OG0008907 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008907_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g045170.3.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00171650 evm_27.TU.AmTr_v1... No description available 0.12 OrthoFinder output from all 47 species
AT2G04235 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.09 OrthoFinder output from all 47 species
Als_g03243 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71786.t1 Aspi01Gene71786 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015635 No alias not classified & original description: CDS=89-3238 0.05 OrthoFinder output from all 47 species
Ceric.09G042800.1 Ceric.09G042800 not classified & original description: pacid=50586606... 0.09 OrthoFinder output from all 47 species
Dcu_g36291 No alias scaffold protein *(KNL1) of kinetochore KNL1-Mis12-Ndc80... 0.03 OrthoFinder output from all 47 species
GSVIVT01030128001 No alias No description available 0.08 OrthoFinder output from all 47 species
Gb_06390 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_06391 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Gb_06392 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_06393 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_34187 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_34992 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os06g40590.1 LOC_Os06g40590 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Len_g07448 No alias scaffold protein *(KNL1) of kinetochore KNL1-Mis12-Ndc80... 0.06 OrthoFinder output from all 47 species
MA_48262g0010 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Spa_g09448 No alias scaffold protein *(KNL1) of kinetochore KNL1-Mis12-Ndc80... 0.07 OrthoFinder output from all 47 species
Tin_g08297 No alias scaffold protein *(KNL1) of kinetochore KNL1-Mis12-Ndc80... 0.07 OrthoFinder output from all 47 species
Zm00001e037438_P001 Zm00001e037438 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!