Solyc07g044760.3.1 (PMH2, ATRH53, Solyc07g044760)

Aliases : PMH2, ATRH53, Solyc07g044760

Description : RNA helicase (PMH)

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g044760.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00092p00127820	PMH2, ATRH53,...	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
Adi_g055951	emb1138	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06747	emb1138	group-II intron splicing RNA helicase *(PMH) & original...	0.02	OrthoFinder output from all 47 species
Ala_g14243	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g14982	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01062	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03195	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Als_g05682	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Als_g14234	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g09620	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01355	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g08480	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.06	OrthoFinder output from all 47 species
Azfi_s0022.g016145	PRH75	not classified & original description: CDS=1-2178	0.03	OrthoFinder output from all 47 species
Azfi_s0052.g031680	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Cba_g01233	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g36237	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Ceric.17G055300.1	emb1138, Ceric.17G055300	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Ceric.38G064300.1	PRH75, Ceric.38G064300	not classified & original description: pacid=50580225...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020734.25	PMH2, ATRH53	DEAD-box ATP-dependent RNA helicase 53, mitochondrial...	0.02	OrthoFinder output from all 47 species
Dac_g01008	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Dac_g02286	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g04260	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Dac_g08101	PRH75	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g10256	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g09784	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Ehy_g02845	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g07831	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g15362	emb1138	group-II intron splicing RNA helicase *(PMH) & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01000821001	PMH2, ATRH53	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
LOC_Os07g05050.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.02	OrthoFinder output from all 47 species
LOC_Os09g34910.1	PRH75, LOC_Os09g34910	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
LOC_Os12g41715.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Lfl_g38604	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_10206082g0010	PMH2, ATRH53	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
MA_17924g0010	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_17924g0020	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia...	0.04	OrthoFinder output from all 47 species
Mp2g07080.1	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Msp_g01214	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g10755	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g13082	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Ore_g07399	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Ore_g38810	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g16512	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g13894	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g30474	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c1_40060V3.1	emb1138, Pp3c1_40060	DEAD box RNA helicase (RH3)	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016750	PRH75	not classified & original description: CDS=177-2189	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0281.g027107	PRH75	not classified & original description: CDS=248-2341	0.04	OrthoFinder output from all 47 species
Sam_g06711	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Smo10677	emb1138	RNA processing.organelle machineries.RNA...	0.02	OrthoFinder output from all 47 species
Smo150370	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Spa_g06515	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Spa_g08414	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Spa_g18181	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g08271	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.06	OrthoFinder output from all 47 species
Zm00001e003219_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.04	OrthoFinder output from all 47 species
Zm00001e010187_P002	PRH75, Zm00001e010187	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
Zm00001e018107_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.08	OrthoFinder output from all 47 species
Zm00001e034728_P002	PRH75, Zm00001e034728	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	121	288
IPR001650	Helicase_C	328	436

External Links

No external refs found!

Solyc07g044760.3.1 (PMH2, ATRH53, Solyc07g044760)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation