Solyc07g043620.3.1 (ARF6, Solyc07g043620)

Aliases : ARF6, Solyc07g043620

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g043620.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00215270	ARF21,...	Auxin response factor 7 OS=Oryza sativa subsp. japonica	0.01	OrthoFinder output from all 47 species
AMTR_s00061p00076820	ARF4,...	Auxin response factor 23 OS=Oryza sativa subsp. indica	0.02	OrthoFinder output from all 47 species
AMTR_s00061p00078770	ARF4,...	Auxin response factor 9 OS=Oryza sativa subsp. japonica	0.1	OrthoFinder output from all 47 species
AMTR_s00155p00067370	ARF10,...	RNA biosynthesis.transcriptional activation.B3...	0.05	OrthoFinder output from all 47 species
Dac_g41121	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01019566001	ARF9	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Sam_g04734	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g08676	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g39909	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc10g086130.3.1	ARF16, Solyc10g086130	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	256	339
IPR003340	B3_DNA-bd	130	231

External Links

No external refs found!

Solyc07g043620.3.1 (ARF6, Solyc07g043620)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation