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  5. Solyc07g042010.4.1

Solyc07g042010.4.1 (RecQl3, ATRECQ3,...)


Aliases : RecQl3, ATRECQ3, Solyc07g042010

Description : ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana (sp|q9ft72|rql3_arath : 805.0)


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g042010.4.1

Target Alias Description ECC score Gene Family Method Actions
AT1G31360 MED34, ATRECQ2, RECQL2 RECQ helicase L2 0.03 OrthoFinder output from all 47 species
AT4G35740 RecQl3, ATRECQ3 DEAD/DEAH box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Ala_g09424 RecQl3, ATRECQ3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22121 ATRECQ4A, ATSGS1, RECQ4A helicase component *(RecQ4A) of RTR Holliday junction... 0.02 OrthoFinder output from all 47 species
Ceric.34G005600.1 RECQI1, Ceric.34G005600 not classified & original description: pacid=50623064... 0.03 OrthoFinder output from all 47 species
Dde_g43590 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Sam_g49278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 41 206
IPR001650 Helicase_C 247 361
IPR032284 RecQ_Zn-bd 376 447
No external refs found!