1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g032380.4.1

Solyc07g032380.4.1 (Solyc07g032380)


Aliases : Solyc07g032380

Description : Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana (sp|q8s9d1|pp395_arath : 532.0)


Gene families : OG0008372 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008372_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g032380.4.1
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Aev_g07249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023894 No alias not classified & original description: CDS=1-2331 0.03 OrthoFinder output from all 47 species
Cba_g32696 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g14564 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015378001 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.14 OrthoFinder output from all 47 species
Gb_09464 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.06 OrthoFinder output from all 47 species
Msp_g15174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29551 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 45 104
IPR002885 Pentatricopeptide_repeat 185 239
IPR002885 Pentatricopeptide_repeat 263 311
IPR002885 Pentatricopeptide_repeat 333 379
IPR002885 Pentatricopeptide_repeat 127 172
No external refs found!