Solyc07g020870.3.1 (PUB26, Solyc07g020870)

Aliases : PUB26, Solyc07g020870

Description : ubiquitin E3 ligase (CERBERUS/LIN)

Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g020870.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00110960	evm_27.TU.AmTr_v1...	No description available	0.04	OrthoFinder output from all 47 species
MA_1171557g0010	No alias	ubiquitin E3 ligase (CERBERUS/LIN)	0.03	OrthoFinder output from all 47 species
MA_15009g0010	PUB26	Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus...	0.03	OrthoFinder output from all 47 species
Zm00001e016398_P001	Zm00001e016398	ubiquitin E3 ligase (CERBERUS/LIN)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	181	252
IPR001680	WD40_repeat	864	899

External Links

No external refs found!