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  5. Solyc07g016200.3.1

Solyc07g016200.3.1 (PBA1, Solyc07g016200)


Aliases : PBA1, Solyc07g016200

Description : component beta type-1 of 26S proteasome


Gene families : OG0003808 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g016200.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00199560 PBA1,... Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Adi_g063247 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aob_g25523 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aop_g00255 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ceric.24G046300.1 PBA1, Ceric.24G046300 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001098.5 PBA1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Cre06.g279000 PBA1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Cre12.g531100 PBA1 Protein degradation.26S proteasome.20S core... 0.05 OrthoFinder output from all 47 species
GSVIVT01032253001 PBA1 Protein degradation.26S proteasome.20S core... 0.05 OrthoFinder output from all 47 species
Len_g14846 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Mp6g09980.1 PBA1 component beta type-1 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Nbi_g00361 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ore_g05180 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004858 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Tin_g26432 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 14 191
No external refs found!