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  5. Solyc07g008760.4.1

Solyc07g008760.4.1 (Solyc07g008760)


Aliases : Solyc07g008760

Description : no hits & (original description: none)


Gene families : OG0005251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005251_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g008760.4.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00141370 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Aob_g25745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.32G028400.1 Ceric.32G028400 not classified & original description: pacid=50598293... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000448.24 No alias No description available 0.07 OrthoFinder output from all 47 species
Cre09.g401700 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g07789 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000237001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os07g27180.1 LOC_Os07g27180 no hits & (original description: none) 0.21 OrthoFinder output from all 47 species
Len_g23452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g12550.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Sam_g19465 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g30421 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009534_P001 Zm00001e009534 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 660 691
IPR013105 TPR_2 625 658
No external refs found!