Solyc07g007890.3.1 (Solyc07g007890)

Aliases : Solyc07g007890

Description : no hits & (original description: none)

Gene families : OG0004355 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004355_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g007890.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00133890	evm_27.TU.AmTr_v1...	No description available	0.07	OrthoFinder output from all 47 species
Adi_g086850	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.02	OrthoFinder output from all 47 species
Cba_g36944	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.02	OrthoFinder output from all 47 species
Ceric.23G060100.1	Ceric.23G060100	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.05	OrthoFinder output from all 47 species
Dac_g01772	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.02	OrthoFinder output from all 47 species
Dac_g08742	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.04	OrthoFinder output from all 47 species
Dcu_g33198	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.02	OrthoFinder output from all 47 species
Ehy_g14129	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.02	OrthoFinder output from all 47 species
GSVIVT01015594001	No alias	No description available	0.07	OrthoFinder output from all 47 species
Gb_09722	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os09g03600.1	LOC_Os09g03600	no hits & (original description: none)	0.11	OrthoFinder output from all 47 species
Len_g16359	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.06	OrthoFinder output from all 47 species
Lfl_g13190	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.03	OrthoFinder output from all 47 species
MA_160950g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Mp3g23240.1	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Nbi_g26310	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.04	OrthoFinder output from all 47 species
Ore_g08378	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.05	OrthoFinder output from all 47 species
Pir_g13608	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.03	OrthoFinder output from all 47 species
Ppi_g16066	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.03	OrthoFinder output from all 47 species
Sam_g06697	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.03	OrthoFinder output from all 47 species
Tin_g22557	No alias	component *(NOT10) of mRNA deadenylation CCR4-NOT...	0.04	OrthoFinder output from all 47 species
Zm00001e009419_P004	Zm00001e009419	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006475	internal protein amino acid acetylation	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016573	histone acetylation	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0018394	peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019734	TPR_repeat	401	427

External Links

No external refs found!

Solyc07g007890.3.1 (Solyc07g007890)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation