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  5. Solyc07g007170.3.1

Solyc07g007170.3.1 (Solyc07g007170)


Aliases : Solyc07g007170

Description : no hits & (original description: none)


Gene families : OG0000957 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000957_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g007170.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272380 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AMTR_s00002p00271240 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Adi_g112268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09131 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g19306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63256 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0436.g069942 No alias not classified & original description: CDS=1-840 0.05 OrthoFinder output from all 47 species
Dac_g16764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_19820 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os11g37230.1 LOC_Os11g37230 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g11294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10274793g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10426524g0010 No alias Probable E3 ubiquitin-protein ligase RHY1A... 0.06 OrthoFinder output from all 47 species
Msp_g27907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g30129 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g107290.3.1 Solyc01g107290 Probable E3 ubiquitin-protein ligase RHY1A... 0.04 OrthoFinder output from all 47 species
Spa_g02703 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!