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  5. Solyc06g084310.4.1

Solyc06g084310.4.1 (Solyc06g084310)


Aliases : Solyc06g084310

Description : component Sm-D1 of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0003223 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g084310.4.1
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00127560 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
AT3G07590 No alias Small nuclear ribonucleoprotein family protein 0.1 OrthoFinder output from all 47 species
Adi_g009378 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Adi_g077290 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
Aob_g06290 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.12 OrthoFinder output from all 47 species
Aob_g38306 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Cba_g02227 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Dac_g24843 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Dac_g32409 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
GSVIVT01014776001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.13 OrthoFinder output from all 47 species
MA_466601g0010 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Tin_g02947 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Tin_g23233 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Zm00001e041053_P001 Zm00001e041053 component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 5 69
No external refs found!