Solyc06g084270.3.1 (Solyc06g084270)

Aliases : Solyc06g084270

Description : DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana (sp|q8h1f6|dgp3_arath : 421.0)

Gene families : OG0006215 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006215_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g084270.3.1
Cluster	HCCA: Cluster_153

Target	Alias	Description	ECC score	Gene Family Method
AT4G02790	No alias	GTP-binding family protein	0.07	OrthoFinder output from all 47 species
Aev_g00810	No alias	ribosome biogenesis GTPase *(RgbA) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g12630	No alias	ribosome biogenesis GTPase *(RgbA) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene53696.t2	Aspi01Gene53696	ribosome bioGenesis GTPase *(RgbA) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.13G030800.1	Ceric.13G030800	ribosome biogenesis GTPase *(RgbA) & original...	0.05	OrthoFinder output from all 47 species
Dcu_g15823	No alias	ribosome biogenesis GTPase *(RgbA) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01011078001	No alias	DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Mp1g13850.1	No alias	DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Ore_g38635	No alias	ribosome biogenesis GTPase *(RgbA) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g04259	No alias	ribosome biogenesis GTPase *(RgbA) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008458	No alias	ribosome biogenesis GTPase *(RgbA) & original...	0.04	OrthoFinder output from all 47 species
Sam_g35590	No alias	ribosome biogenesis GTPase *(RgbA) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g51029	No alias	ribosome biogenesis GTPase *(RgbA) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e031798_P004	Zm00001e031798	DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006073	GTP-bd	214	302

External Links

No external refs found!

Solyc06g084270.3.1 (Solyc06g084270)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation