1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g083530.3.1

Solyc06g083530.3.1 (VAMP726, ATVAMP726,...)


Aliases : VAMP726, ATVAMP726, Solyc06g083530

Description : R-SNARE component VAMP721/VAMP722 of SNARE cell-plate vesicle fusion complex. VAMP7-type R-type SNARE longin protein


Gene families : OG0000720 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000720_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g083530.3.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00217050 VAMP726,... Vesicle trafficking.SNARE target membrane recognition... 0.04 OrthoFinder output from all 47 species
AMTR_s00067p00148060 ATVAMP725,... Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
Adi_g009467 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Aev_g08135 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Als_g10078 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Als_g38555 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Cre04.g224750 ATVAMP725, VAMP725 Vesicle trafficking.SNARE target membrane recognition... 0.05 OrthoFinder output from all 47 species
Cre04.g225850 VAMP727, ATVAMP727 Vesicle trafficking.SNARE target membrane recognition... 0.06 OrthoFinder output from all 47 species
Cre04.g225900 ATVAMP725, VAMP725 Vesicle trafficking.SNARE target membrane recognition... 0.04 OrthoFinder output from all 47 species
GSVIVT01028579001 ATVAMP721,... Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
LOC_Os07g09600.1 ATVAMP725,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.05 OrthoFinder output from all 47 species
LOC_Os07g14540.1 ATVAMP725,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.03 OrthoFinder output from all 47 species
MA_92947g0030 VAMP726, ATVAMP726 VAMP7-type R-type SNARE longin protein 0.05 OrthoFinder output from all 47 species
Nbi_g05177 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Sam_g28378 No alias R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Spa_g24602 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Zm00001e003924_P002 VAMP727,... VAMP7-type R-type SNARE longin protein 0.04 OrthoFinder output from all 47 species
Zm00001e009585_P002 ATVAMP725,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.07 OrthoFinder output from all 47 species
Zm00001e011409_P003 ATVAMP725,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016192 vesicle-mediated transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
InterPro domains Description Start Stop
IPR010908 Longin_dom 32 111
IPR001388 Synaptobrevin-like 129 215
No external refs found!