Solyc06g083520.3.1 (Solyc06g083520)

Aliases : Solyc06g083520

Description : NUG1/NSN1 LSU processome regulatory GTPase

Gene families : OG0005439 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005439_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g083520.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00109p00118420	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT3G07050	No alias	GTP-binding family protein	0.05	OrthoFinder output from all 47 species
Adi_g018555	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome &...	0.03	OrthoFinder output from all 47 species
Als_g01808	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome &...	0.02	OrthoFinder output from all 47 species
Ceric.24G062000.1	Ceric.24G062000	regulatory GTPase (NUG1/NSN1) of LSU processome &...	0.05	OrthoFinder output from all 47 species
Cre12.g533050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dac_g02291	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome &...	0.03	OrthoFinder output from all 47 species
GSVIVT01028584001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Gb_31371	No alias	NUG1/NSN1 LSU processome regulatory GTPase	0.05	OrthoFinder output from all 47 species
LOC_Os01g27730.1	LOC_Os01g27730	NUG1/NSN1 LSU processome regulatory GTPase	0.03	OrthoFinder output from all 47 species
Len_g15925	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome &...	0.02	OrthoFinder output from all 47 species
MA_19380g0010	No alias	NUG1/NSN1 LSU processome regulatory GTPase	0.02	OrthoFinder output from all 47 species
Mp8g17210.1	No alias	NUG1/NSN1 LSU processome regulatory GTPase	0.03	OrthoFinder output from all 47 species
Nbi_g09087	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome &...	0.03	OrthoFinder output from all 47 species
Ore_g18478	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome &...	0.05	OrthoFinder output from all 47 species
Sam_g19575	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome &...	0.03	OrthoFinder output from all 47 species
Zm00001e004937_P002	Zm00001e004937	NUG1/NSN1 LSU processome regulatory GTPase	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	HCCA
CC	GO:0000178	exosome (RNase complex)	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006475	internal protein amino acid acetylation	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016573	histone acetylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0018394	peptidyl-lysine acetylation	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
CC	GO:1905354	exoribonuclease complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014813	Gnl3_N_dom	16	89
IPR006073	GTP-bd	267	329

External Links

No external refs found!

Solyc06g083520.3.1 (Solyc06g083520)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation