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  5. Solyc06g083460.4.1

Solyc06g083460.4.1 (LUH, Solyc06g083460)


Aliases : LUH, Solyc06g083460

Description : transcriptional co-repressor (LUG)


Gene families : OG0000790 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000790_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g083460.4.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene55141.t1 LUG, RON2,... component *(LUG/LUH) of transcriptional co-repressor... 0.04 OrthoFinder output from all 47 species
Cba_g06869 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Cba_g14193 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Cba_g35403 LUG, RON2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g43130.1 LUH, LOC_Os04g43130 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Mp1g15050.1 LUG, RON2 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006594 LisH 10 36
IPR001680 WD40_repeat 741 776
IPR001680 WD40_repeat 499 526
IPR001680 WD40_repeat 574 611
IPR001680 WD40_repeat 534 568
IPR001680 WD40_repeat 658 693
No external refs found!