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  5. Solyc06g083200.3.1

Solyc06g083200.3.1 (Solyc06g083200)


Aliases : Solyc06g083200

Description : Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana (sp|q9lsf5|pp254_arath : 466.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g083200.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.03 OrthoFinder output from all 47 species
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.02 OrthoFinder output from all 47 species
AMTR_s00119p00084460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27800,... 0.03 OrthoFinder output from all 47 species
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G80550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 OrthoFinder output from all 47 species
Aev_g08644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24766 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_19514 No alias Pentatricopeptide repeat-containing protein At3g25210,... 0.03 OrthoFinder output from all 47 species
Gb_22860 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
LOC_Os05g28720.1 LOC_Os05g28720 Pentatricopeptide repeat-containing protein At3g62470,... 0.05 OrthoFinder output from all 47 species
MA_196124g0010 No alias Pentatricopeptide repeat-containing protein At3g25210,... 0.04 OrthoFinder output from all 47 species
MA_38485g0010 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.03 OrthoFinder output from all 47 species
Solyc03g116540.1.1 Solyc03g116540 Pentatricopeptide repeat-containing protein At1g52640,... 0.04 OrthoFinder output from all 47 species
Tin_g06924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005655_P001 Zm00001e005655 Pentatricopeptide repeat-containing protein At3g22670,... 0.02 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 100 156
IPR002885 Pentatricopeptide_repeat 294 322
IPR002885 Pentatricopeptide_repeat 330 357
IPR002885 Pentatricopeptide_repeat 221 269
No external refs found!